PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20205s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 542aa    MW: 59756.5 Da    PI: 6.8281
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20205s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.2e-15189248155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Araha.20205s0001.1.p 189 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 248
                           57*******************666664477446*************************98 PP

2AP247.15.9e-15293342355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Araha.20205s0001.1.p 293 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 342
                           9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.61E-23189258No hitNo description
PfamPF008473.1E-12189248IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-17189257IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-16190256IPR001471AP2/ERF domain
PROSITE profilePS5103219.322190256IPR001471AP2/ERF domain
SMARTSM003806.2E-30190262IPR001471AP2/ERF domain
PRINTSPR003674.7E-6191202IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18291351IPR016177DNA-binding domain
CDDcd000181.29E-24291352No hitNo description
PROSITE profilePS5103219.506292350IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-18292350IPR001471AP2/ERF domain
SMARTSM003801.5E-32292356IPR001471AP2/ERF domain
PfamPF008471.4E-9293342IPR001471AP2/ERF domain
PRINTSPR003674.7E-6332352IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MNSNNWLAFP LSPTHSSLPP HIHSSQTSHF NLGLVNDNID NPFQNQEWNM INPHGGGSEG  60
GEVPKVADFL GVSKAGDHHP DHNLVPYNDI HQTNESDYYF QTNSLLPTVV TCASNAPNNY  120
ELQESAHNLQ SLTLSMGSTG AAAAEAATVK ASPVETSADN SSSTTNPSGG AIVEATPRRT  180
LETFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD  240
LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH  300
QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL  360
ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY GAASGSSSVA SSSRLQLQPY  420
PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSYSYIQTQL HLHQQQTNNY LQSSSHSSQL  480
YNAYLQSNPG LLHGFISDNN NTSGFLGNNG IGIGSTSTVG SSADQEEFPA VKVDYDMPPS  540
GG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5065500.0AY506550.1 Arabidopsis thaliana PLETHORA2 (PLT2) mRNA, complete cds.
GenBankBT0202770.0BT020277.1 Arabidopsis thaliana At1g51190 mRNA, complete cds.
GenBankBT0204600.0BT020460.1 Arabidopsis thaliana At1g51190 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891621.10.0AP2/EREBP transcription factor
SwissprotQ5YGP70.0PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLD7KHN80.0D7KHN8_ARALL; AP2/EREBP transcription factor
STRINGscaffold_104875.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30152767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.10.0AP2 family protein